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Tutorial: Manipulate area
Tutorial: Manipulate bend
Tutorial: Manipulate bifurcation
Tutorial: Manipulate branch
Tutorial: Manipulate curvature
Tutorial: Manipulate surface roughness
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A
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C
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D
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E
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F
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G
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I
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M
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N
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O
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P
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R
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S
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U
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V
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W
A
add_common_arguments() (in module argparse_common)
add_noise_to_existing_voronoi_diagram() (in module manipulate_surface)
add_noise_to_voronoi_diagram_new_points() (in module manipulate_surface)
alpha_beta_intersection() (in module estimate_alpha_and_beta)
argparse_common (module)
attach_clipped_regions_to_surface() (in module surface_operations)
automated_landmarking (module)
C
centerline_operations (module)
change_area() (in module manipulate_area)
check_branch_number() (in module manipulate_branch)
check_if_surface_is_merged() (in module surface_operations)
clamp_profile() (in module manipulate_branch)
common (module)
compute_angle() (in module estimate_alpha_and_beta)
compute_angle_between_vectors() (in module vessel_reconstruction_tools)
compute_centerlines() (in module surface_operations)
compute_centers() (in module surface_operations)
compute_circleness() (in module surface_operations)
compute_curvature() (in module estimate_alpha_and_beta)
compute_discrete_derivatives() (in module centerline_operations)
compute_least_square_plane() (in module common)
compute_number_of_masked_points() (in module vessel_reconstruction_tools)
compute_quantities() (in module estimate_alpha_and_beta)
compute_spline() (in module vessel_reconstruction_tools)
compute_splined_centerline() (in module centerline_operations)
compute_voronoi_vector_to_centerline_angle() (in module vessel_reconstruction_tools)
convert_numpy_data_to_polydata() (in module common)
create_new_surface() (in module voronoi_operations)
create_parent_artery_patches() (in module vessel_reconstruction_tools)
create_vtk_array() (in module vtk_wrapper)
D
detach_branch() (in module manipulate_branch)
E
estimate_alpha_and_beta (module)
estimate_alpha_and_beta() (in module estimate_alpha_and_beta)
extract_cylindric_interpolation_voronoi_diagram() (in module vessel_reconstruction_tools)
extract_ica_centerline() (in module surface_operations)
extract_patches_ids() (in module vessel_reconstruction_tools)
extract_patches_ids_siphon() (in module vessel_reconstruction_tools)
extract_single_line() (in module vtk_wrapper)
F
filter_centerlines() (in module centerline_operations)
filter_voronoi() (in module manipulate_branch)
find_angle() (in module estimate_alpha_and_beta)
find_angle_odr() (in module estimate_alpha_and_beta)
G
get_all_branches() (in module manipulate_branch)
get_angle() (in module common)
get_asymmetric_displacement() (in module manipulate_area)
get_bifurcating_and_diverging_point_data() (in module centerline_operations)
get_cell_data_array() (in module vtk_wrapper)
get_centerline_between_clipping_points() (in module centerline_operations)
get_centerline_for_splitting_voronoi() (in module manipulate_branch)
get_centerline_tolerance() (in module centerline_operations)
get_clamped_branch_rotation_factors() (in module manipulate_branch)
get_clamped_branch_translation_factors() (in module manipulate_branch)
get_clipped_capped_surface() (in module surface_operations)
get_clipped_diverging_centerline() (in module centerline_operations)
get_closest_point() (in module common)
get_curvilinear_coordinate() (in module centerline_operations)
get_direction_parameters() (in module common)
get_distance() (in module common)
get_diverging_point_id() (in module centerline_operations)
get_dx() (in module manipulate_curvature)
get_end_point() (in module centerline_operations)
get_exact_surface_normal() (in module manipulate_branch)
get_factor() (in module manipulate_area)
get_horizontal_direction_parameters() (in module common)
get_inlet_and_outlet_centers() (in module surface_operations)
get_k1k2_basis() (in module centerline_operations)
get_line_to_change() (in module centerline_operations)
get_manipulated_centerlines() (in module centerline_operations)
get_most_distant_point() (in module common)
get_moved_siphon() (in module estimate_alpha_and_beta)
get_new_branch_position() (in module manipulate_branch)
get_new_centerlines() (in module estimate_alpha_and_beta)
get_no_smooth_cl() (in module surface_operations)
get_number_of_arrays() (in module vtk_wrapper)
get_origin() (in module manipulate_branch)
get_parameters() (in module common)
get_path_names() (in module common)
get_point_data_array() (in module vtk_wrapper)
get_points() (in module manipulate_bifurcation)
get_region_of_interest_and_diverging_centerlines() (in module centerline_operations)
get_relevant_outlets() (in module surface_operations)
get_rotation_axis() (in module manipulate_branch)
get_rotation_axis_and_angle() (in module manipulate_branch)
get_rotation_matrix() (in module common)
get_sorted_lines() (in module centerline_operations)
get_sorted_outlets() (in module common)
get_split_voronoi_diagram() (in module voronoi_operations)
get_start_ids() (in module vessel_reconstruction_tools)
get_translation_parameters() (in module manipulate_branch)
get_uncapped_surface() (in module surface_operations)
get_vertical_direction_parameters() (in module common)
get_vtk_array() (in module vtk_wrapper)
get_vtk_cell_locator() (in module vtk_wrapper)
get_vtk_point_locator() (in module vtk_wrapper)
gram_schmidt() (in module common)
I
insert_new_voronoi_points() (in module vessel_reconstruction_tools)
interpolate_patch_centerlines() (in module vessel_reconstruction_tools)
interpolate_spline() (in module vessel_reconstruction_tools)
interpolate_two_cells() (in module vessel_reconstruction_tools)
interpolate_voronoi_diagram() (in module vessel_reconstruction_tools)
is_point_inside_interpolation_cylinder() (in module vessel_reconstruction_tools)
is_surface_capped() (in module surface_operations)
M
main_area() (in module manipulate_area)
main_bend() (in module manipulate_bend)
main_bifurcation() (in module manipulate_bifurcation)
main_branch() (in module manipulate_branch)
main_curvature() (in module manipulate_curvature)
main_surface() (in module manipulate_surface)
make_voronoi_smooth() (in module manipulate_curvature)
manipulate_area (module)
manipulate_area() (in module manipulate_area)
manipulate_bend (module)
manipulate_bend() (in module manipulate_bend)
manipulate_bend_vertically() (in module manipulate_bend)
manipulate_bifurcation (module)
manipulate_bifurcation() (in module manipulate_bifurcation)
manipulate_branch (module)
manipulate_branch() (in module manipulate_branch)
manipulate_centerline_branch() (in module manipulate_branch)
manipulate_curvature (module)
manipulate_curvature() (in module manipulate_curvature)
manipulate_surface (module)
manipulate_surface() (in module manipulate_surface)
manipulate_voronoi_branch() (in module manipulate_branch)
merge_cl() (in module manipulate_bifurcation)
move_all_centerlines() (in module manipulate_curvature)
move_and_rotate_branch() (in module manipulate_branch)
move_branch() (in module manipulate_branch)
move_past_sphere() (in module vtk_wrapper)
move_voronoi_horizontally() (in module manipulate_bend)
move_voronoi_vertically() (in module manipulate_bend)
N
normalize() (in module vessel_reconstruction_tools)
O
odr_line() (in module estimate_alpha_and_beta)
P
pick_branch() (in module manipulate_branch)
pick_new_branch_position() (in module manipulate_branch)
prepare_output_surface() (in module surface_operations)
prepare_surface() (in module surface_operations)
prepare_voronoi_diagram() (in module surface_operations)
provide_inlet() (in module surface_operations)
provide_relevant_outlets() (in module surface_operations)
R
read_command_line() (in module estimate_alpha_and_beta)
read_command_line_area() (in module manipulate_area)
read_command_line_bend() (in module manipulate_bend)
read_command_line_bifurcation() (in module manipulate_bifurcation)
read_command_line_branch() (in module manipulate_branch)
read_command_line_curvature() (in module manipulate_curvature)
read_command_line_surface() (in module manipulate_surface)
read_polydata() (in module vtk_wrapper)
remove_distant_voronoi_points() (in module voronoi_operations)
restricted_float() (in module argparse_common)
reverse_centerline() (in module centerline_operations)
rotate_branch() (in module manipulate_branch)
rotate_cl() (in module manipulate_bifurcation)
rotate_voronoi() (in module manipulate_bifurcation)
rotation_matrix() (in module manipulate_bifurcation)
rotation_profile() (in module manipulate_branch)
S
set_voronoi_data() (in module manipulate_branch)
set_voronoi_point_data() (in module manipulate_branch)
smooth_voronoi_diagram() (in module voronoi_operations)
str2bool() (in module argparse_common)
surface_operations (module)
U
update_factor() (in module manipulate_area)
V
vessel_reconstruction_tools (module)
vmtk_branch_clipper() (in module vmtk_wrapper)
vmtk_cap_polydata() (in module vmtk_wrapper)
vmtk_compute_branch_extractor() (in module vmtk_wrapper)
vmtk_compute_centerline_attributes() (in module vmtk_wrapper)
vmtk_compute_centerline_sections() (in module vmtk_wrapper)
vmtk_compute_centerlines() (in module vmtk_wrapper)
vmtk_compute_geometric_features() (in module vmtk_wrapper)
vmtk_compute_surface_normals() (in module vmtk_wrapper)
vmtk_compute_voronoi_diagram() (in module vmtk_wrapper)
vmtk_endpoint_extractor() (in module vmtk_wrapper)
vmtk_polyball_modeller() (in module vmtk_wrapper)
vmtk_resample_centerline() (in module vmtk_wrapper)
vmtk_smooth_centerline() (in module vmtk_wrapper)
vmtk_smooth_surface() (in module vmtk_wrapper)
vmtk_surface_connectivity() (in module vmtk_wrapper)
vmtk_surface_curvature() (in module vmtk_wrapper)
vmtk_surface_distance() (in module vmtk_wrapper)
vmtk_wrapper (module)
voronoi_diagram_interpolation() (in module vessel_reconstruction_tools)
voronoi_operations (module)
vtk_clean_polydata() (in module vtk_wrapper)
vtk_clip_polydata() (in module vtk_wrapper)
vtk_compute_connectivity() (in module vtk_wrapper)
vtk_compute_mass_properties() (in module vtk_wrapper)
vtk_compute_normal_gradients() (in module vtk_wrapper)
vtk_compute_polydata_normals() (in module vtk_wrapper)
vtk_compute_threshold() (in module vtk_wrapper)
vtk_convert_unstructured_grid_to_polydata() (in module vtk_wrapper)
vtk_extract_feature_edges() (in module vtk_wrapper)
vtk_marching_cube() (in module vtk_wrapper)
vtk_merge_polydata() (in module vtk_wrapper)
vtk_plane() (in module vtk_wrapper)
vtk_sphere() (in module vtk_wrapper)
vtk_triangulate_surface() (in module vtk_wrapper)
vtk_wrapper (module)
W
write_alpha_beta_point() (in module estimate_alpha_and_beta)
write_parameters() (in module common)
write_polydata() (in module vtk_wrapper)
write_vtk_points() (in module vtk_wrapper)
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